Ziyue Yang
Publications
Externalizing Research Synthesis and Validation in AI Scientists through a Research Harness
AI systems can increasingly automate scientific workflows, but the reasoning that links prior evidence, generated ideas, experiments and final claims often remains implicit inside model inference. Here we introduce Xcientist, a research harness that externalizes research synthesis and experimental validation into inspectable, contract-governed processes. Xcientist organizes literature evidence, idea states, implementation plans, ablation records and repair traces as persistent research artifacts, so that generated mechanisms can be grounded, executed, tested and revised without losing their evidential basis. We identify claim drift as a failure mode of automated research, where runnable artifacts no longer support the mechanism originally claimed. Across training-free memory systems, graph-structured traffic forecasting and multi-scale physics-informed neural networks, Xcientist preserves traceable trajectories from problem formulation to mechanism design, validation and bounded revision. These results suggest that AI scientists should be evaluated not only by their final artifacts, but by whether their synthesis and validation processes remain attributable, inspectable and scientifically accountable.
DeepSurvey: Enhancing Analytical Depth and Citation Reliability in Automated Survey Generation
As scientific literature grows rapidly, automated survey generation has become a key capability for AI scientists and human researchers. However, existing systems suffer from limited analytical depth due to reliance on abstracts and isolated paper processing, and unreliable citations from imprecise retrieval and post-hoc grounding, producing superficial surveys and may mislead researchers. We present DeepSurvey, an agentic system that addresses both. To enhance depth, DeepSurvey extracts structured keynotes from full-text papers, models cross-paper relationships through clustering and comparative analysis, and integrates code-repository analysis to recover implementation-level details. To fortify reliability, it combines citation-graph expansion with hybrid filtering for topic-focussed retrieval, enforces evidence-constrained citation assignment, and deploys multi-granularity agentic refinement to validate citation-claim alignment. Experiments show that DeepSurvey achieves the highest content score (8.644/10) and citation quality (12.3% and 9.3% recall and precision gains over the strongest baseline), generalizes more robustly across domains (0.14 vs 0.22 to 0.69 CS-to-non-CS drop), and is preferred over human-written surveys by domain experts (83.3% overall quality, 100% content depth).