Bowen Jiang
Publications
MinerU.Chem: A High-Precision System for Optical Chemical Structure and Reaction Recognition
In organic chemistry papers and patents, molecular structures, reaction schemes, and experimental conditions are often presented as molecular structure depictions, reaction diagrams, and complex tables or figures. Such information is difficult for general-purpose document parsing systems to directly convert into machine-readable data. This limits data production for organic chemistry knowledge base construction and for AI for Chemistry tasks such as reaction prediction, retrosynthesis, condition recommendation, molecular property prediction, and drug molecule design. This report introduces MinerU.Chem, a document parsing system for organic chemistry literature integrated into the MinerU online platform. Built on top of MinerU's general document parsing pipeline, MinerU.Chem adds five chemistry-specific modules: chemistry relevance filtering, molecular structure detection, molecule identifier extraction, molecular structure recognition, and reaction scheme parsing. Together, these modules convert organic-chemistry-related image regions in documents into a Molecule Summary List and a Reaction Summary List. For molecular structure recognition, MinerU.Chem uses CARBON (Complex Atomic Representation and Bonding Object Notation) as its core representation. CARBON enables recognition results to preserve both the visual layout of the original image and complex chemical semantics, while supporting the export of standard downstream formats such as MolFile and SMILES. On the SMILES-evaluable subset of MolRecBench-Wild (N=2,392), MinerU.Chem's molecular structure recognition module achieves a SMILES exact-match accuracy of 93.02%, outperforming the best evaluated comparison system, GPT-5.6-Sol (74.87%), by 18.15 percentage points. The system has been integrated into the MinerU online platform and is available at https://mineru.net/OpenSourceTools/Extractor .
HindSight: Evaluating Research Idea Generation via Future Impact
Evaluating AI-generated research ideas typically relies on LLM judges or human panels -- both subjective and disconnected from actual research impact. We introduce \hs{}, a time-split evaluation framework that measures idea quality by matching generated ideas against real future publications and scoring them by citation impact and venue acceptance. Using a temporal cutoff~$T$, we restrict an idea generation system to pre-$T$ literature, then evaluate its outputs against papers published in the subsequent 30 months. Experiments across 10 AI/ML research topics reveal a striking disconnect: LLM-as-Judge finds no significant difference between retrieval-augmented and vanilla idea generation ($p{=}0.584$), while \hs{} shows the retrieval-augmented system produces 2.5$\times$ higher-scoring ideas ($p{<}0.001$). Moreover, \hs{} scores are \emph{negatively} correlated with LLM-judged novelty ($ρ{=}{-}0.29$, $p{<}0.01$), suggesting that LLMs systematically overvalue novel-sounding ideas that never materialize in real research.