Santiago Aranguri
Publications
Inference-Time Toxicity Mitigation in Protein Language Models
Protein language models (PLMs) are becoming practical tools for de novo protein design, yet their dual-use potential raises safety concerns. We show that domain adaptation to specific taxonomic groups can elicit toxic protein generation, even when toxicity is not the training objective. To address this, we adapt Logit Diff Amplification (LDA) as an inference-time control mechanism for PLMs. LDA modifies token probabilities by amplifying the logit difference between a baseline model and a toxicity-finetuned model, requiring no retraining. Across four taxonomic groups, LDA consistently reduces predicted toxicity rate (measured via ToxDL2) below the taxon-finetuned baseline while preserving biological plausibility. We evaluate quality using Fréchet ESM Distance and predicted foldability (pLDDT), finding that LDA maintains distributional similarity to natural proteins and structural viability (unlike activation-based steering methods that tend to degrade sequence properties). Our results demonstrate that LDA provides a practical safety knob for protein generators that mitigates elicited toxicity while retaining generative quality.
In-the-Wild Model Organisms: Mitigating Undesirable Emergent Behaviors in Production LLM Post-Training via Data Attribution
We propose activation-based data attribution, a method that traces behavioral changes in post-trained language models to responsible training datapoints. By computing activation-difference vectors for both test prompts and preference pairs and ranking by cosine similarity, we identify datapoints that cause specific behaviors and validate these attributions causally by retraining with modified data. Clustering behavior-datapoint similarity matrices also enables unsupervised discovery of emergent behaviors. Applying this to OLMo 2's production DPO training, we surfaced distractor-triggered compliance: a harmful behavior where the model complies with dangerous requests when benign formatting instructions are appended. Filtering top-ranked datapoints reduces this behavior by 63% while switching their labels achieves 78%. Our method outperforms gradient-based attribution and LLM-judge baselines while being over 10 times cheaper than both. This in-the-wild model organism - emerging from contaminated preference data rather than deliberate injection - provides a realistic benchmark for safety techniques.