Kun Liu
Publications
SubQuad: Near-Quadratic-Free Structure Inference with Distribution-Balanced Objectives in Adaptive Receptor framework
Comparative analysis of adaptive immune repertoires at population scale is hampered by two practical bottlenecks: the near-quadratic cost of pairwise affinity evaluations and dataset imbalances that obscure clinically important minority clonotypes. We introduce SubQuad, an end-to-end pipeline that addresses these challenges by combining antigen-aware, near-subquadratic retrieval with GPU-accelerated affinity kernels, learned multimodal fusion, and fairness-constrained clustering. The system employs compact MinHash prefiltering to sharply reduce candidate comparisons, a differentiable gating module that adaptively weights complementary alignment and embedding channels on a per-pair basis, and an automated calibration routine that enforces proportional representation of rare antigen-specific subgroups. On large viral and tumor repertoires SubQuad achieves measured gains in throughput and peak memory usage while preserving or improving recall@k, cluster purity, and subgroup equity. By co-designing indexing, similarity fusion, and equity-aware objectives, SubQuad offers a scalable, bias-aware platform for repertoire mining and downstream translational tasks such as vaccine target prioritization and biomarker discovery.
AdvSynGNN: Structure-Adaptive Graph Neural Nets via Adversarial Synthesis and Self-Corrective Propagation
Graph neural networks frequently encounter significant performance degradation when confronted with structural noise or non-homophilous topologies. To address these systemic vulnerabilities, we present AdvSynGNN, a comprehensive architecture designed for resilient node-level representation learning. The proposed framework orchestrates multi-resolution structural synthesis alongside contrastive objectives to establish geometry-sensitive initializations. We develop a transformer backbone that adaptively accommodates heterophily by modulating attention mechanisms through learned topological signals. Central to our contribution is an integrated adversarial propagation engine, where a generative component identifies potential connectivity alterations while a discriminator enforces global coherence. Furthermore, label refinement is achieved through a residual correction scheme guided by per-node confidence metrics, which facilitates precise control over iterative stability. Empirical evaluations demonstrate that this synergistic approach effectively optimizes predictive accuracy across diverse graph distributions while maintaining computational efficiency. The study concludes with practical implementation protocols to ensure the robust deployment of the AdvSynGNN system in large-scale environments.
Chimera: Neuro-Symbolic Attention Primitives for Trustworthy Dataplane Intelligence
Deploying expressive learning models directly on programmable dataplanes promises line-rate, low-latency traffic analysis but remains hindered by strict hardware constraints and the need for predictable, auditable behavior. Chimera introduces a principled framework that maps attention-oriented neural computations and symbolic constraints onto dataplane primitives, enabling trustworthy inference within the match-action pipeline. Chimera combines a kernelized, linearized attention approximation with a two-layer key-selection hierarchy and a cascade fusion mechanism that enforces hard symbolic guarantees while preserving neural expressivity. The design includes a hardware-aware mapping protocol and a two-timescale update scheme that together permit stable, line-rate operation under realistic dataplane budgets. The paper presents the Chimera architecture, a hardware mapping strategy, and empirical evidence showing that neuro-symbolic attention primitives can achieve high-fidelity inference within the resource envelope of commodity programmable switches.